Package: GANPA 1.2
GANPA: Gene Association Network-Based Pathway Analysis (GANPA)
A network-based gene weighting algorithm for pathway enrichment analysis, using either RNA-seq or microarray data. Zhaoyuan Fang, Weidong Tian and Hongbin Ji (2012) <doi:10.1038/cr.2011.149>.
Authors:
GANPA_1.2.tar.gz
GANPA_1.2.zip(r-4.5)GANPA_1.2.zip(r-4.4)GANPA_1.2.zip(r-4.3)
GANPA_1.2.tgz(r-4.4-any)GANPA_1.2.tgz(r-4.3-any)
GANPA_1.2.tar.gz(r-4.5-noble)GANPA_1.2.tar.gz(r-4.4-noble)
GANPA_1.2.tgz(r-4.4-emscripten)GANPA_1.2.tgz(r-4.3-emscripten)
GANPA.pdf |GANPA.html✨
GANPA/json (API)
| # Install 'GANPA' in R: |
| install.packages('GANPA', repos = c('https://fang-zhaoyuan.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 8 months agofrom:f9c90dda98. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 16 2024 |
| R-4.5-win | OK | Oct 16 2024 |
| R-4.5-linux | OK | Oct 16 2024 |
| R-4.4-win | OK | Oct 16 2024 |
| R-4.4-mac | OK | Oct 16 2024 |
| R-4.3-win | OK | Oct 16 2024 |
| R-4.3-mac | OK | Oct 16 2024 |
Exports:GSE.Test.Mainweight.gsets.testweight.gsets.with.msprot
Dependencies:GANPAdata
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Gene Association Network-based Pathway Analysis | GANPA-package GANPA |
| Gene-weighted pathway significance analysis | GSE.Test.Main |
| Weight genes in pathways with a gene association network | weight.gsets.test |
| Weight genes in pathways with a gene association network after correction for multi-subunit proteins | weight.gsets.with.msprot |
